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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14511 and 14512 are separated by 2034 nucleotides
14512 and 14513 are separated by 435 nucleotides
14513 and 14514 are separated by 482 nucleotides
14514 and 14515 are separated by 1769 nucleotides
mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108,337 to 111,111
14511
mRNA_6144: 14512 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 113,146 to 115,077
14512
mRNA_6145: 14513 - HMMPfam-Protein of unknown function (DUF2456)-PF10445, at 115,513 to 116,915
14513
mRNA_6146: 14514 - K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e, at 117,398 to 118,882
14514
mRNA_6147: 14515 - Hypothetical Protein, at 120,652 to 120,840
14515
Group
Condition
mRNA
_6143
mRNA
_6144
mRNA
_6145
mRNA
_6146
mRNA
_6147
14511
14512
14513
14514
14515
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.6
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.5
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.6
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
-0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
-0.0
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.3
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.3
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
+0.6
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.5
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.0
+1.0
+0.1
N.D.
N.D.
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