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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14513 and 14514 are separated by 482 nucleotides
14514 and 14515 are separated by 1769 nucleotides
14515 and 14516 are separated by 661 nucleotides
14516 and 14517 are separated by 426 nucleotides
mRNA_6145: 14513 - HMMPfam-Protein of unknown function (DUF2456)-PF10445, at 115,513 to 116,915
14513
mRNA_6146: 14514 - K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e, at 117,398 to 118,882
14514
mRNA_6147: 14515 - Hypothetical Protein, at 120,652 to 120,840
14515
mRNA_6148: 14516 - Hypothetical Protein, at 121,502 to 122,312
14516
mRNA_6149: 14517 - Hypothetical Protein, at 122,739 to 123,475
14517
Group
Condition
mRNA
_6145
mRNA
_6146
mRNA
_6147
mRNA
_6148
mRNA
_6149
14513
14514
14515
14516
14517
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
N.D.
-0.3
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
N.D.
+0.5
-2.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
N.D.
-0.5
-0.6
growth on oleic acid
YNB Glucose
+0.0
N.D.
N.D.
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
N.D.
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
N.D.
-0.7
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
N.D.
+0.2
-0.7
auxotrophy
Dropout Complete
-0.2
N.D.
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
N.D.
-0.3
+0.4
auxotrophy
YNB Glucose
-0.1
N.D.
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
N.D.
-0.6
+0.5
growth on ypd
YPD
+0.1
N.D.
N.D.
+0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
N.D.
+0.6
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
N.D.
+0.2
-0.0
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