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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14518 and 14519 are separated by 196 nucleotides
14519 and 14520 are separated by 347 nucleotides
14520 and 14521 are separated by 820 nucleotides
14521 and 14522 are separated by 1292 nucleotides
mRNA_6150: 14518 - KOG3399 Predicted Yippee-type zinc-binding protein, at 123,821 to 124,477
14518
mRNA_6151: 14519 - Hypothetical Protein, at 124,674 to 126,819
14519
mRNA_6152: 14520 - HMMPfam-Slx4 endonuclease-PF09494, at 127,167 to 130,520
14520
mRNA_6153: 14521 - K00757 udp, UPP uridine phosphorylase, at 131,341 to 132,602
14521
mRNA_6154: 14522 - K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma, at 133,895 to 137,413
14522
Group
Condition
mRNA
_6150
mRNA
_6151
mRNA
_6152
mRNA
_6153
mRNA
_6154
14518
14519
14520
14521
14522
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.8
-0.5
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.3
-1.8
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.5
+0.4
-0.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-1.9
-0.1
+1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-2.0
-0.1
+1.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.6
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
-1.3
+0.0
+0.9
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-1.3
-0.0
+0.7
auxotrophy
YNB Glucose
+0.0
+0.2
-1.2
-0.0
+1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.9
+0.7
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.7
+0.2
+0.3
growth on ypd
YPD
-0.2
+0.3
+0.0
+0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.9
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.3
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
+0.5
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
+0.1
+0.3
+0.8
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+1.2
-0.1
+0.1
auxotrophy
Dropout Complete
+0.2
-0.0
-0.4
+0.3
+1.3
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.5
+0.3
+0.7
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