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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14530 and 14531 are separated by 304 nucleotides
14531 and 14532 are separated by 126 nucleotides
14532 and 14533 are separated by 191 nucleotides
14533 and 14534 are separated by 151 nucleotides
mRNA_6162: 14530 - K11427 DOT1L, DOT1 histone-lysine N-methyltransferase, H3 lysine-79 specific, at 145,690 to 148,355
14530
mRNA_6163: 14531 - HMMPfam-Autophagy protein 16 (ATG16)-PF08614, at 148,660 to 149,493
14531
mRNA_6164: 14532 - BLAST ECSIT domain-containing protein [Rhizoctonia solani A..., at 149,620 to 151,505
14532
mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151,697 to 155,852
14533
mRNA_6166: 14534 - Hypothetical Protein, at 156,004 to 157,222
14534
Group
Condition
mRNA
_6162
mRNA
_6163
mRNA
_6164
mRNA
_6165
mRNA
_6166
14530
14531
14532
14533
14534
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-4.1
N.D.
+0.1
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-3.7
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-1.9
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-2.3
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.5
N.D.
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.5
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.7
N.D.
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose
-0.3
+0.4
N.D.
+0.0
+0.0
auxotrophy
Dropout Complete
-0.4
+0.1
N.D.
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
N.D.
-0.1
+0.4
growth on ypd
YPD
+0.0
+0.0
N.D.
-0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.6
N.D.
+0.0
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.6
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
N.D.
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.1
N.D.
-0.2
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.6
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.8
N.D.
+0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
N.D.
+0.1
+0.5
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