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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14532 and 14533 are separated by 191 nucleotides
14533 and 14534 are separated by 151 nucleotides
14534 and 14535 are separated by 545 nucleotides
14535 and 14536 are separated by 312 nucleotides
mRNA_6164: 14532 - BLAST ECSIT domain-containing protein [Rhizoctonia solani A..., at 149,620 to 151,505
14532
mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151,697 to 155,852
14533
mRNA_6166: 14534 - Hypothetical Protein, at 156,004 to 157,222
14534
mRNA_6167: 14535 - K11672 ACTR5, ARP5, INO80M actin-related protein 5, at 157,768 to 160,667
14535
mRNA_6168: 14536 - SUPERFAMILY--SSF52047, at 160,980 to 164,129
14536
Group
Condition
mRNA
_6164
mRNA
_6165
mRNA
_6166
mRNA
_6167
mRNA
_6168
14532
14533
14534
14535
14536
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.9
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.4
N.D.
-0.2
growth on ypd
YPD
N.D.
-0.0
+0.4
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.3
N.D.
+0.1
auxotrophy
Dropout Complete
N.D.
+0.2
+0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.5
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.5
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.5
N.D.
+0.3
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