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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14539 and 14540 are separated by 433 nucleotides
14540 and 14541 are separated by 369 nucleotides
14541 and 14542 are separated by 587 nucleotides
14542 and 14543 are separated by 261 nucleotides
mRNA_6171: 14539 - SUPERFAMILY--SSF52047, at 166,707 to 169,416
14539
mRNA_6172: 14540 - K02685 PRI2 DNA primase large subunit, at 169,850 to 171,909
14540
mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172,279 to 176,176
14541
mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095
14542
mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910
14543
Group
Condition
mRNA
_6171
mRNA
_6172
mRNA
_6173
mRNA
_6174
mRNA
_6175
14539
14540
14541
14542
14543
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.3
-1.3
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
+0.1
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.0
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.3
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
-0.1
+0.0
auxotrophy
Dropout Complete
-0.1
N.D.
+0.2
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
+0.1
-0.0
auxotrophy
YNB Glucose
-0.3
N.D.
+0.1
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.1
+0.0
+0.5
growth on ypd
YPD
+0.4
N.D.
+0.3
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.2
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.2
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.2
+0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.4
-0.1
+0.4
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