Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14541 and 14542 are separated by 587 nucleotides14542 and 14543 are separated by 261 nucleotides14543 and 14544 are separated by 1415 nucleotides14544 and 14545 are separated by 379 nucleotides mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172,279 to 176,176 14541 mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910 14543 mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182,326 to 182,954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793 14545
Group Condition mRNA_6173 mRNA_6174 mRNA_6175 mRNA_6176 mRNA_6177
14541 14542 14543 14544 14545
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -1.3 -0.9 N.D. +0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 -0.3 -0.1 N.D. -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 -0.6 +0.2 N.D. -0.0
growth on oleic acid YNB Glucose +0.0 -0.2 -0.1 N.D. -0.2
growth on ypd YPD +0.3 -0.3 +0.1 N.D. -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.2 +0.0 N.D. +0.0
growth on oleic acid YNB Oleic Acid +0.0 -0.2 +0.1 N.D. +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 -0.3 +0.2 N.D. -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 -0.1 +0.4 N.D. -0.6
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +0.4 -0.1 N.D. -0.4
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.1 +0.0 N.D. +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.1 -0.3 N.D. +0.6
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 +0.1 +0.1 N.D. +0.3
growth on ricinoleic acid YNB Glucose -0.2 +0.2 -0.2 N.D. +0.5
auxotrophy Dropout Complete +0.2 +0.0 -0.0 N.D. +0.2
auxotrophy YNB Glucose 75mM Methionine +0.2 +0.3 -0.1 N.D. -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.1 -0.0 N.D. +0.3
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.1 +0.1 N.D. +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.2 +0.4 +0.2 N.D. -0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.0 +0.5 N.D. +0.2
auxotrophy YNB Glucose +0.1 +0.4 +0.2 N.D. +0.2
remove
mRNA_6173
plot
remove
mRNA_6174
plot
remove
mRNA_6175
remove
mRNA_6176
plot
remove
mRNA_6177
plot