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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14541 and 14542 are separated by 587 nucleotides
14542 and 14543 are separated by 261 nucleotides
14543 and 14544 are separated by 1415 nucleotides
14544 and 14545 are separated by 379 nucleotides
mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172,279 to 176,176
14541
mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095
14542
mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910
14543
mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182,326 to 182,954
14544
mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793
14545
Group
Condition
mRNA
_6173
mRNA
_6174
mRNA
_6175
mRNA
_6176
mRNA
_6177
14541
14542
14543
14544
14545
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.3
-0.9
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.3
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.6
+0.2
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.2
-0.1
N.D.
-0.2
growth on ypd
YPD
+0.3
-0.3
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
+0.0
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.1
+0.4
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
-0.3
N.D.
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.2
N.D.
+0.5
auxotrophy
Dropout Complete
+0.2
+0.0
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.5
N.D.
+0.2
auxotrophy
YNB Glucose
+0.1
+0.4
+0.2
N.D.
+0.2
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