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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14543 and 14544 are separated by 1415 nucleotides
14544 and 14545 are separated by 379 nucleotides
14545 and 14546 are separated by 993 nucleotides
14546 and 14547 are separated by 378 nucleotides
mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910
14543
mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182,326 to 182,954
14544
mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793
14545
mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185,787 to 186,902
14546
mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187,281 to 188,756
14547
Group
Condition
mRNA
_6175
mRNA
_6176
mRNA
_6177
mRNA
_6178
mRNA
_6179
14543
14544
14545
14546
14547
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
-0.6
-0.2
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.4
-0.1
-0.6
growth on ypd
YPD
+0.1
N.D.
-0.2
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
-0.1
-0.8
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.2
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.1
+0.0
-0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.3
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.5
-0.2
-0.3
auxotrophy
YNB Glucose
+0.2
N.D.
+0.2
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.0
N.D.
+0.2
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.0
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.5
N.D.
+0.2
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.3
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
N.D.
+0.5
-0.1
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.6
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
-0.1
+0.9
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