Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14543 and 14544 are separated by 1415 nucleotides14544 and 14545 are separated by 379 nucleotides14545 and 14546 are separated by 993 nucleotides14546 and 14547 are separated by 378 nucleotides mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910 14543 mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182,326 to 182,954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793 14545 mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185,787 to 186,902 14546 mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187,281 to 188,756 14547
Group Condition mRNA_6175 mRNA_6176 mRNA_6177 mRNA_6178 mRNA_6179
14543 14544 14545 14546 14547
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 N.D. -0.6 -0.2 -1.3
facs on lipid accumulation Sorted High BODIPY Gate -0.1 N.D. -0.4 -0.1 -0.6
growth on ypd YPD +0.1 N.D. -0.2 +0.1 -1.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 N.D. +0.0 -0.1 -0.8
growth on oleic acid YNB Glucose -0.1 N.D. -0.2 -0.2 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.2 N.D. -0.1 +0.0 -0.9
ypd buoyancy 40 hrs Low Buoyancy +0.0 N.D. +0.0 -0.1 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 N.D. -0.2 -0.3 +0.3
ypd buoyancy 40 hrs Median Buoyancy -0.0 N.D. +0.3 -0.0 -0.5
growth on ricinoleic acid YNB Glucose -0.2 N.D. +0.5 -0.2 -0.3
auxotrophy YNB Glucose +0.2 N.D. +0.2 -0.2 -0.3
growth on oleic acid YNB Oleic Acid +0.1 N.D. +0.1 -0.1 -0.1
auxotrophy Dropout Complete -0.0 N.D. +0.2 -0.2 +0.0
auxotrophy YNB Glucose 75mM Methionine -0.1 N.D. -0.0 +0.0 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.5 N.D. +0.2 +0.1 -0.7
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. -0.0 -0.1 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 N.D. +0.3 -0.2 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.9 N.D. +0.5 -0.1 +0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 N.D. +0.6 -0.3 +0.4
auxotrophy YNB Glucose 75mM Arginine +0.1 N.D. +0.2 +0.2 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 N.D. -0.1 -0.1 +0.9
remove
mRNA_6175
plot
remove
mRNA_6176
plot
remove
mRNA_6177
remove
mRNA_6178
plot
remove
mRNA_6179
plot