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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14545 and 14546 are separated by 993 nucleotides
14546 and 14547 are separated by 378 nucleotides
14547 and 14548 are separated by 112 nucleotides
14548 and 14549 are separated by 456 nucleotides
mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793
14545
mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185,787 to 186,902
14546
mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187,281 to 188,756
14547
mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188,869 to 192,529
14548
mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192,986 to 195,356
14549
Group
Condition
mRNA
_6177
mRNA
_6178
mRNA
_6179
mRNA
_6180
mRNA
_6181
14545
14546
14547
14548
14549
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
-1.3
-1.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
-0.6
-1.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
-0.9
-1.2
N.D.
growth on ypd
YPD
-0.2
+0.1
-1.1
-0.4
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.8
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
-0.2
-0.3
-0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
-0.0
-0.7
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
-0.3
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.4
+0.0
N.D.
auxotrophy
Dropout Complete
+0.2
-0.2
+0.0
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
-0.5
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.3
+0.4
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.7
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.9
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.1
+0.7
-0.2
N.D.
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