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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14548 and 14549 are separated by 456 nucleotides
14549 and 14550 are separated by 796 nucleotides
14550 and 14551 are separated by 658 nucleotides
14551 and 14552 are separated by 821 nucleotides
mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188,869 to 192,529
14548
mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192,986 to 195,356
14549
mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196,153 to 199,901
14550
mRNA_6183: 14551 - Hypothetical Protein, at 200,560 to 201,520
14551
mRNA_6184: 14552 - Hypothetical Protein, at 202,342 to 203,677
14552
Group
Condition
mRNA
_6180
mRNA
_6181
mRNA
_6182
mRNA
_6183
mRNA
_6184
14548
14549
14550
14551
14552
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.7
N.D.
-2.9
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-2.0
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
N.D.
-1.3
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
N.D.
-0.5
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
N.D.
-0.5
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.8
+0.0
-0.3
growth on oleic acid
YNB Glucose
-0.5
N.D.
-0.3
-0.0
-0.0
growth on ricinoleic acid
YNB Glucose
-0.7
N.D.
-0.4
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.0
+0.2
-0.5
auxotrophy
YNB Glucose
-0.3
N.D.
-0.6
-0.1
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.4
-0.2
+0.6
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.0
+0.0
+0.1
auxotrophy
Dropout Complete
-0.3
N.D.
-0.2
-0.0
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
-0.1
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
N.D.
+1.0
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.7
N.D.
+0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.4
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.0
+0.4
growth on ypd
YPD
-0.4
N.D.
+0.9
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+1.8
-0.0
-0.3
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