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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14553 and 14554 are separated by 197 nucleotides
14554 and 14555 are separated by 1043 nucleotides
14555 and 14556 are separated by 172 nucleotides
14556 and 14557 are separated by 209 nucleotides
mRNA_6185: 14553 - SUPERFAMILY--SSF69118, at 203,886 to 204,987
14553
mRNA_6186: 14554 - K01613 psd, PISD phosphatidylserine decarboxylase, at 205,185 to 207,177
14554
mRNA_6187: 14555 - BLAST Cytoplasmic dynein 1 intermediate chain 1 [Wallem..., at 208,221 to 211,423
14555
mRNA_6188: 14556 - Hypothetical Protein, at 211,596 to 212,147
14556
mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212,357 to 214,481
14557
Group
Condition
mRNA
_6185
mRNA
_6186
mRNA
_6187
mRNA
_6188
mRNA
_6189
14553
14554
14555
14556
14557
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.9
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-0.3
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
N.D.
+0.4
-0.1
+0.2
auxotrophy
YNB Glucose
-0.2
N.D.
-0.2
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.0
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
N.D.
-0.2
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.8
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
-0.3
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.3
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
-0.2
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
+0.2
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.4
+0.0
-0.1
growth on ypd
YPD
-0.0
N.D.
-0.4
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.3
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
N.D.
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
-0.1
+0.3
+0.5
auxotrophy
Dropout Complete
+0.1
N.D.
+0.0
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.6
N.D.
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.7
N.D.
-0.3
-0.2
-0.1
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