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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14554 and 14555 are separated by 1043 nucleotides
14555 and 14556 are separated by 172 nucleotides
14556 and 14557 are separated by 209 nucleotides
14557 and 14558 are separated by 558 nucleotides
mRNA_6186: 14554 - K01613 psd, PISD phosphatidylserine decarboxylase, at 205,185 to 207,177
14554
mRNA_6187: 14555 - BLAST Cytoplasmic dynein 1 intermediate chain 1 [Wallem..., at 208,221 to 211,423
14555
mRNA_6188: 14556 - Hypothetical Protein, at 211,596 to 212,147
14556
mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212,357 to 214,481
14557
mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215,040 to 217,246
14558
Group
Condition
mRNA
_6186
mRNA
_6187
mRNA
_6188
mRNA
_6189
mRNA
_6190
14554
14555
14556
14557
14558
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.9
-0.2
-0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.1
-0.2
-0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.3
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
-0.1
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.0
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.0
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.0
+0.0
-0.2
growth on ypd
YPD
N.D.
-0.4
-0.1
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.2
+0.0
-0.2
auxotrophy
YNB Glucose
N.D.
-0.2
-0.3
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.0
+0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.2
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.1
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.1
+0.3
-0.3
auxotrophy
Dropout Complete
N.D.
+0.0
+0.1
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.2
+0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.3
+0.5
+0.0
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