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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14555 and 14556 are separated by 172 nucleotides
14556 and 14557 are separated by 209 nucleotides
14557 and 14558 are separated by 558 nucleotides
14558 and 14559 are separated by 772 nucleotides
mRNA_6187: 14555 - BLAST Cytoplasmic dynein 1 intermediate chain 1 [Wallem..., at 208,221 to 211,423
14555
mRNA_6188: 14556 - Hypothetical Protein, at 211,596 to 212,147
14556
mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212,357 to 214,481
14557
mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215,040 to 217,246
14558
mRNA_6191: 14559 - K01485 codA cytosine deaminase, at 218,019 to 218,832
14559
Group
Condition
mRNA
_6187
mRNA
_6188
mRNA
_6189
mRNA
_6190
mRNA
_6191
14555
14556
14557
14558
14559
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.2
-0.6
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.2
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.1
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
-0.2
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
-0.1
-0.5
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.2
-0.3
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
+0.2
-0.0
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.1
+0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
-0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.0
+0.0
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
+0.1
-0.4
-0.5
growth on ypd
YPD
-0.4
-0.1
+0.3
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
+0.0
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
+0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
-0.3
+0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.0
-0.2
+0.3
auxotrophy
Dropout Complete
+0.0
+0.1
+0.0
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.3
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.5
+0.0
-0.2
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