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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14557 and 14558 are separated by 558 nucleotides
14558 and 14559 are separated by 772 nucleotides
14559 and 14560 are separated by 687 nucleotides
14560 and 14561 are separated by 109 nucleotides
mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212,357 to 214,481
14557
mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215,040 to 217,246
14558
mRNA_6191: 14559 - K01485 codA cytosine deaminase, at 218,019 to 218,832
14559
mRNA_6192: 14560 - Hypothetical Protein, at 219,520 to 220,950
14560
mRNA_6193: 14561 - Hypothetical Protein, at 221,060 to 222,668
14561
Group
Condition
mRNA
_6189
mRNA
_6190
mRNA
_6191
mRNA
_6192
mRNA
_6193
14557
14558
14559
14560
14561
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
-0.5
-0.9
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.6
-0.4
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.5
+0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
+0.0
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.3
-0.2
-0.6
auxotrophy
YNB Glucose
+0.2
-0.1
+0.3
-0.3
-0.6
auxotrophy
Dropout Complete
+0.0
-0.3
+0.2
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
+0.1
-0.1
-0.2
growth on ypd
YPD
+0.3
-0.3
+0.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
-0.0
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
+0.0
+0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
+0.1
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
-0.5
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.1
+0.7
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
+0.1
+0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.3
+0.6
-0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
+0.2
+0.5
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
-1.1
+1.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.0
-0.2
+0.5
+0.1
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