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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14562 and 14563 are separated by 177 nucleotides
14563 and 14564 are separated by 452 nucleotides
14564 and 14565 are separated by 134 nucleotides
14565 and 14566 overlap by 2 nucleotides
mRNA_6194: 14562 - SUPERFAMILY--SSF56112, at 222,804 to 223,699
14562
mRNA_6195: 14563 - SUPERFAMILY--SSF52047, at 223,877 to 225,110
14563
mRNA_6196: 14564 - Hypothetical Protein, at 225,563 to 227,023
14564
mRNA_6197: 14565 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 227,158 to 229,573
14565
mRNA_6198: 14566 - BLAST tyrosine kinase domain protein [Rhizoctonia solani AG..., at 229,572 to 230,681
14566
Group
Condition
mRNA
_6194
mRNA
_6195
mRNA
_6196
mRNA
_6197
mRNA
_6198
14562
14563
14564
14565
14566
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
-1.8
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.6
-0.9
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.6
-0.2
N.D.
-1.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.4
-0.4
N.D.
-0.7
growth on oleic acid
YNB Glucose
+0.3
-0.2
-0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
-0.2
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.4
+0.8
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+1.2
-0.4
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+1.0
-0.5
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.5
-0.3
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
+0.5
N.D.
-0.0
growth on ypd
YPD
+0.1
+0.8
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.6
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.9
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.5
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.6
+1.0
-0.6
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.5
+1.2
-0.5
N.D.
+0.1
auxotrophy
Dropout Complete
+0.2
+0.6
-0.1
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+1.0
+0.1
N.D.
+0.2
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