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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14564 and 14565 are separated by 134 nucleotides
14565 and 14566 overlap by 2 nucleotides
14566 and 14567 are separated by 229 nucleotides
14567 and 14568 are separated by 405 nucleotides
mRNA_6196: 14564 - Hypothetical Protein, at 225,563 to 227,023
14564
mRNA_6197: 14565 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 227,158 to 229,573
14565
mRNA_6198: 14566 - BLAST tyrosine kinase domain protein [Rhizoctonia solani AG..., at 229,572 to 230,681
14566
mRNA_6199: 14567 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 230,911 to 232,731
14567
mRNA_6200: 14568 - Hypothetical Protein, at 233,137 to 235,524
14568
Group
Condition
mRNA
_6196
mRNA
_6197
mRNA
_6198
mRNA
_6199
mRNA
_6200
14564
14565
14566
14567
14568
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-0.6
-2.0
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
N.D.
+0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.0
-2.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-1.3
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.7
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.6
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.4
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
N.D.
+0.3
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.2
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.1
+0.2
+0.0
growth on ypd
YPD
-0.1
N.D.
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose
-0.6
N.D.
+0.2
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.1
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
N.D.
-0.5
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+0.2
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
+0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.2
+0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
-0.0
-0.0
+0.5
auxotrophy
Dropout Complete
-0.1
N.D.
+0.8
+0.4
-0.1
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