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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14567 and 14568 are separated by 405 nucleotides
14568 and 14569 are separated by 951 nucleotides
14569 and 14570 are separated by 353 nucleotides
14570 and 14571 are separated by 317 nucleotides
mRNA_6199: 14567 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 230,911 to 232,731
14567
mRNA_6200: 14568 - Hypothetical Protein, at 233,137 to 235,524
14568
mRNA_6201: 14569 - Hypothetical Protein, at 236,476 to 237,020
14569
mRNA_6202: 14570 - KOG4475 FOG Immunoglobin and related proteins, at 237,374 to 240,451
14570
mRNA_6203: 14571 - HMMPfam-HbrB-like-PF08539, at 240,769 to 243,130
14571
Group
Condition
mRNA
_6199
mRNA
_6200
mRNA
_6201
mRNA
_6202
mRNA
_6203
14567
14568
14569
14570
14571
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
+0.1
-0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
+0.1
-0.1
+0.1
growth on ypd
YPD
-0.0
+0.1
-0.1
+0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.0
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
+0.1
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.0
+0.6
+0.5
+0.7
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.0
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.0
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.3
+0.6
-0.4
growth on oleic acid
YNB Glucose
+0.2
+0.0
+0.1
+0.1
-0.5
auxotrophy
Dropout Complete
+0.4
-0.1
+0.1
+0.5
-0.6
auxotrophy
YNB Glucose
+0.2
+0.0
+0.1
+0.5
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.4
-0.5
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.2
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
+0.6
+0.8
+1.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
+0.3
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.4
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
+0.1
+0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
+0.2
+0.4
-0.0
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