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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14569 and 14570 are separated by 353 nucleotides
14570 and 14571 are separated by 317 nucleotides
14571 and 14572 are separated by 176 nucleotides
14572 and 14573 are separated by 101 nucleotides
mRNA_6201: 14569 - Hypothetical Protein, at 236,476 to 237,020
14569
mRNA_6202: 14570 - KOG4475 FOG Immunoglobin and related proteins, at 237,374 to 240,451
14570
mRNA_6203: 14571 - HMMPfam-HbrB-like-PF08539, at 240,769 to 243,130
14571
mRNA_6204: 14572 - KOG1618 Predicted phosphatase, at 243,307 to 244,867
14572
mRNA_6205: 14573 - HMMPfam-Peptidase M50B-like-PF13398, at 244,969 to 246,074
14573
Group
Condition
mRNA
_6201
mRNA
_6202
mRNA
_6203
mRNA
_6204
mRNA
_6205
14569
14570
14571
14572
14573
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.2
-0.3
+0.1
auxotrophy
YNB Glucose
+0.1
+0.5
-0.6
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.0
-0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.0
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.5
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.1
-0.5
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.0
+0.3
-0.2
auxotrophy
Dropout Complete
+0.1
+0.5
-0.6
-0.0
+0.1
growth on ypd
YPD
-0.1
+0.1
-0.5
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.3
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
-0.0
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.1
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
-0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
+0.4
-0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
-0.2
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.6
-0.4
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
+0.7
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.1
+0.4
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.7
-0.1
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+1.3
-0.3
+0.0
+0.5
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