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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14570 and 14571 are separated by 317 nucleotides
14571 and 14572 are separated by 176 nucleotides
14572 and 14573 are separated by 101 nucleotides
14573 and 14574 are separated by 445 nucleotides
mRNA_6202: 14570 - KOG4475 FOG Immunoglobin and related proteins, at 237,374 to 240,451
14570
mRNA_6203: 14571 - HMMPfam-HbrB-like-PF08539, at 240,769 to 243,130
14571
mRNA_6204: 14572 - KOG1618 Predicted phosphatase, at 243,307 to 244,867
14572
mRNA_6205: 14573 - HMMPfam-Peptidase M50B-like-PF13398, at 244,969 to 246,074
14573
mRNA_6206: 14574 - K10524 NRK1_2 nicotinamide/nicotinate riboside kinase, at 246,520 to 247,686
14574
Group
Condition
mRNA
_6202
mRNA
_6203
mRNA
_6204
mRNA
_6205
mRNA
_6206
14570
14571
14572
14573
14574
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.0
-0.0
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose
+0.5
-0.6
-0.1
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
-0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.0
+0.3
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
+0.0
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.5
+0.5
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
+0.2
-0.1
-0.3
auxotrophy
Dropout Complete
+0.5
-0.6
-0.0
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.5
+0.4
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.0
-0.4
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
+0.0
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.7
+0.1
+0.4
-0.5
growth on ypd
YPD
+0.1
-0.5
+0.2
+0.5
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
-0.4
+0.4
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
+0.0
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
+0.0
+0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.4
+0.8
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.4
-0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.1
+0.3
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
-0.3
+0.0
+0.5
-0.4
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