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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14572 and 14573 are separated by 101 nucleotides
14573 and 14574 are separated by 445 nucleotides
14574 and 14575 are separated by 562 nucleotides
14575 and 14576 are separated by 683 nucleotides
mRNA_6204: 14572 - KOG1618 Predicted phosphatase, at 243,307 to 244,867
14572
mRNA_6205: 14573 - HMMPfam-Peptidase M50B-like-PF13398, at 244,969 to 246,074
14573
mRNA_6206: 14574 - K10524 NRK1_2 nicotinamide/nicotinate riboside kinase, at 246,520 to 247,686
14574
mRNA_6207: 14575 - KOG2711 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase, at 248,249 to 248,882
14575
mRNA_6208: 14576 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 249,566 to 251,082
14576
Group
Condition
mRNA
_6204
mRNA
_6205
mRNA
_6206
mRNA
_6207
mRNA
_6208
14572
14573
14574
14575
14576
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.5
+0.0
-2.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.6
-0.3
-0.8
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
-0.1
-0.0
-0.3
auxotrophy
YNB Glucose
-0.1
-0.3
-0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.5
-0.1
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.5
-0.5
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.5
-0.1
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
+0.1
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.8
-0.3
-0.7
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.1
-0.6
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
+0.2
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
-0.2
-0.5
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
+0.3
+0.6
-0.5
growth on oleic acid
YNB Oleic Acid
+0.4
-0.2
+0.1
-0.0
+0.2
auxotrophy
Dropout Complete
-0.0
+0.1
+0.0
-0.0
+0.4
growth on oleic acid
YNB Glucose
+0.4
-0.3
+0.3
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.0
+0.4
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.0
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
-0.4
+0.0
+0.6
growth on ypd
YPD
+0.2
+0.5
+0.1
-0.1
+0.2
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