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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14573 and 14574 are separated by 445 nucleotides
14574 and 14575 are separated by 562 nucleotides
14575 and 14576 are separated by 683 nucleotides
14576 and 14577 are separated by 1361 nucleotides
mRNA_6205: 14573 - HMMPfam-Peptidase M50B-like-PF13398, at 244,969 to 246,074
14573
mRNA_6206: 14574 - K10524 NRK1_2 nicotinamide/nicotinate riboside kinase, at 246,520 to 247,686
14574
mRNA_6207: 14575 - KOG2711 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase, at 248,249 to 248,882
14575
mRNA_6208: 14576 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 249,566 to 251,082
14576
mRNA_6209: 14577 - K03006 RPB1, POLR2A DNA-directed RNA polymerase II subunit RPB1, at 252,444 to 258,337
14577
Group
Condition
mRNA
_6205
mRNA
_6206
mRNA
_6207
mRNA
_6208
mRNA
_6209
14573
14574
14575
14576
14577
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
+0.0
-2.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.8
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.5
-0.5
+0.7
N.D.
auxotrophy
YNB Glucose
-0.3
-0.1
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.3
-0.7
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.1
-0.3
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.5
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-0.6
+0.8
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.3
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.4
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.4
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
+0.6
-0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.1
-0.3
+0.3
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
-0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.0
-0.1
+0.4
N.D.
growth on ypd
YPD
+0.5
+0.1
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
+0.0
+0.6
N.D.
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