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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14575 and 14576 are separated by 683 nucleotides
14576 and 14577 are separated by 1361 nucleotides
14577 and 14578 are separated by 1280 nucleotides
14578 and 14579 are separated by 94 nucleotides
mRNA_6207: 14575 - KOG2711 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase, at 248,249 to 248,882
14575
mRNA_6208: 14576 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 249,566 to 251,082
14576
mRNA_6209: 14577 - K03006 RPB1, POLR2A DNA-directed RNA polymerase II subunit RPB1, at 252,444 to 258,337
14577
mRNA_6210: 14578 - HMMPfam-DNA replication and checkpoint protein-PF11719, at 259,618 to 261,776
14578
mRNA_6211: 14579 - Hypothetical Protein, at 261,871 to 262,723
14579
Group
Condition
mRNA
_6207
mRNA
_6208
mRNA
_6209
mRNA
_6210
mRNA
_6211
14575
14576
14577
14578
14579
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-2.4
N.D.
N.D.
-2.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.5
N.D.
N.D.
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
N.D.
N.D.
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.2
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.7
N.D.
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.6
N.D.
N.D.
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
N.D.
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.5
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose
-0.2
+0.3
N.D.
N.D.
-0.0
auxotrophy
Dropout Complete
-0.0
+0.4
N.D.
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.2
+0.3
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
N.D.
-0.0
growth on ypd
YPD
-0.1
+0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.8
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.4
N.D.
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
N.D.
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.6
N.D.
N.D.
+0.4
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