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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14579 and 14580 are separated by 1241 nucleotides
14580 and 14581 are separated by 115 nucleotides
14581 and 14582 are separated by 718 nucleotides
14582 and 14583 are separated by 272 nucleotides
mRNA_6211: 14579 - Hypothetical Protein, at 261,871 to 262,723
14579
mRNA_6212: 14580 - SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 263,965 to 264,991
14580
mRNA_6213: 14581 - KOG2318 Uncharacterized conserved protein, at 265,107 to 268,005
14581
mRNA_6214: 14582 - K11684 BDF1 bromodomain-containing factor 1, at 268,724 to 272,351
14582
mRNA_6215: 14583 - Hypothetical Protein, at 272,624 to 273,109
14583
Group
Condition
mRNA
_6211
mRNA
_6212
mRNA
_6213
mRNA
_6214
mRNA
_6215
14579
14580
14581
14582
14583
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
+1.4
N.D.
N.D.
-1.2
auxotrophy
Dropout Complete
-0.2
-1.6
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.3
+0.3
N.D.
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-1.8
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.6
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-1.5
N.D.
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-1.0
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
-0.0
-0.4
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-1.0
N.D.
N.D.
+0.4
growth on ypd
YPD
+0.2
-0.6
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.5
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+1.9
N.D.
N.D.
-0.6
growth on oleic acid
YNB Glucose
+0.1
+0.4
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+2.1
N.D.
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.5
+1.1
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+1.4
N.D.
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
+1.7
N.D.
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+2.1
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+1.8
N.D.
N.D.
+0.9
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