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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14586 and 14587 are separated by 435 nucleotides
14587 and 14588 are separated by 2453 nucleotides
14588 and 14589 are separated by 225 nucleotides
14589 and 14590 are separated by 285 nucleotides
mRNA_6218: 14586 - K03687 GRPE molecular chaperone GrpE, at 277,373 to 277,948
14586
mRNA_6219: 14587 - HMMPfam-Sec20-PF03908, at 278,384 to 280,109
14587
mRNA_6220: 14588 - Hypothetical Protein, at 282,563 to 283,196
14588
mRNA_6221: 14589 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695, at 283,422 to 285,141
14589
mRNA_6222: 14590 - K07088 K07088 uncharacterized protein, at 285,427 to 287,812
14590
Group
Condition
mRNA
_6218
mRNA
_6219
mRNA
_6220
mRNA
_6221
mRNA
_6222
14586
14587
14588
14589
14590
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-1.4
-2.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.1
-0.6
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.7
-0.5
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.5
-0.2
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.6
-0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.7
-0.6
+0.7
+0.0
growth on ypd
YPD
N.D.
+0.0
-0.0
-0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.8
+0.7
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.8
+1.4
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.4
+0.6
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
+0.3
+0.8
-0.1
auxotrophy
YNB Glucose
N.D.
+0.5
-0.6
+1.0
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
+0.9
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
-0.7
+0.9
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.7
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.3
+0.3
+0.1
auxotrophy
Dropout Complete
N.D.
+0.2
-0.2
+0.9
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+1.5
-0.0
+0.2
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