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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14591 and 14592 are separated by 961 nucleotides
14592 and 14593 are separated by 36 nucleotides
14593 and 14594 are separated by 2916 nucleotides
14594 and 14595 are separated by 966 nucleotides
mRNA_6223: 14591 - BLAST acetyl-coenzyme A synthetase [Rhizoctonia solani AG-1..., at 288,357 to 288,729
14591
mRNA_6224: 14592 - Hypothetical Protein, at 289,691 to 292,264
14592
mRNA_6225: 14593 - Hypothetical Protein, at 292,301 to 294,618
14593
mRNA_6226: 14594 - Hypothetical Protein, at 297,535 to 298,697
14594
mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897
14595
Group
Condition
mRNA
_6223
mRNA
_6224
mRNA
_6225
mRNA
_6226
mRNA
_6227
14591
14592
14593
14594
14595
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.6
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.6
-0.2
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
+0.1
+0.4
N.D.
growth on ypd
YPD
-0.0
+0.5
-0.3
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.4
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-0.2
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.4
+0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
-0.0
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.1
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.5
+0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.3
+0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
+0.1
+0.5
N.D.
auxotrophy
YNB Glucose
+0.3
+1.1
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+1.3
+0.1
-0.0
N.D.
auxotrophy
Dropout Complete
+0.2
+1.3
+0.3
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+1.1
+0.3
+0.0
N.D.
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