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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14595 and 14596 are separated by 2014 nucleotides
14596 and 14597 are separated by 244 nucleotides
14597 and 14598 are separated by 830 nucleotides
14598 and 14599 are separated by 329 nucleotides
mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897
14595
mRNA_6228: 14596 - Hypothetical Protein, at 301,912 to 302,184
14596
mRNA_6229: 14597 - K01895 ACSS, acs acetyl-CoA synthetase, at 302,429 to 305,318
14597
mRNA_6230: 14598 - K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W, at 306,149 to 307,289
14598
mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307,619 to 308,722
14599
Group
Condition
mRNA
_6227
mRNA
_6228
mRNA
_6229
mRNA
_6230
mRNA
_6231
14595
14596
14597
14598
14599
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.2
-5.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.9
+0.6
-4.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.7
+0.6
-2.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
-0.5
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.6
-0.3
-0.5
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.3
-1.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
+0.1
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.1
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.4
+0.9
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
-0.1
-0.7
auxotrophy
YNB Glucose
N.D.
N.D.
+0.0
+0.3
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+1.0
-0.2
-1.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.2
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.6
+0.2
-0.6
growth on ypd
YPD
N.D.
N.D.
+0.0
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+1.0
+0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.1
+1.0
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