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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14601 and 14602 are separated by 1450 nucleotides
14602 and 14603 are separated by 416 nucleotides
14603 and 14604 are separated by 643 nucleotides
14604 and 14605 are separated by 264 nucleotides
mRNA_6233: 14601 - K16945 CDC11 cell division control protein 11, at 312,446 to 314,280
14601
mRNA_6234: 14602 - K00318 PRODH proline dehydrogenase, at 315,731 to 317,718
14602
mRNA_6235: 14603 - K17279 REEP5_6 receptor expression-enhancing protein 5/6, at 318,135 to 318,876
14603
mRNA_6236: 14604 - Hypothetical Protein, at 319,520 to 321,215
14604
mRNA_6237: 14605 - K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6, at 321,480 to 324,944
14605
Group
Condition
mRNA
_6233
mRNA
_6234
mRNA
_6235
mRNA
_6236
mRNA
_6237
14601
14602
14603
14604
14605
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
-0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.4
N.D.
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.3
N.D.
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.1
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.5
N.D.
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
-0.5
+0.0
N.D.
-0.3
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
N.D.
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
N.D.
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
N.D.
-0.1
-0.1
growth on ypd
YPD
+0.3
-0.0
N.D.
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.0
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
N.D.
-0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.1
N.D.
-0.2
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.1
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
N.D.
-0.1
+0.3
auxotrophy
Dropout Complete
+0.1
+0.0
N.D.
-0.0
+0.7
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