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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14607 and 14608 are separated by 1099 nucleotides
14608 and 14609 are separated by 1300 nucleotides
14609 and 14610 are separated by 647 nucleotides
14610 and 14611 are separated by 385 nucleotides
mRNA_6239: 14607 - K01372 BLMH, pepC bleomycin hydrolase, at 328,080 to 329,843
14607
mRNA_6240: 14608 - SUPERFAMILY--SSF51445, at 330,943 to 332,434
14608
mRNA_6241: 14609 - Hypothetical Protein, at 333,735 to 334,704
14609
mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335,352 to 337,546
14610
mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072
14611
Group
Condition
mRNA
_6239
mRNA
_6240
mRNA
_6241
mRNA
_6242
mRNA
_6243
14607
14608
14609
14610
14611
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.7
-0.2
-1.5
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.7
-0.2
-2.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.0
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.0
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
+0.1
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
+0.0
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.0
+0.4
-0.7
+0.4
growth on oleic acid
YNB Glucose
-0.5
+0.3
+0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
+0.0
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.4
-0.2
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.9
+0.1
+0.8
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.2
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
-0.2
+0.2
+0.4
growth on ypd
YPD
+0.1
-0.2
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.9
+0.4
+0.3
+0.2
+0.1
auxotrophy
Dropout Complete
+1.1
+0.4
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.3
+0.2
-0.0
+0.1
+0.3
auxotrophy
YNB Glucose
+1.1
+0.5
+0.2
+0.1
+0.3
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