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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14609 and 14610 are separated by 647 nucleotides
14610 and 14611 are separated by 385 nucleotides
14611 and 14612 are separated by 692 nucleotides
14612 and 14613 are separated by 1071 nucleotides
mRNA_6241: 14609 - Hypothetical Protein, at 333,735 to 334,704
14609
mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335,352 to 337,546
14610
mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072
14611
mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340,765 to 342,148
14612
mRNA_6245: 14613 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 343,220 to 344,409
14613
Group
Condition
mRNA
_6241
mRNA
_6242
mRNA
_6243
mRNA
_6244
mRNA
_6245
14609
14610
14611
14612
14613
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.5
-0.5
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-2.3
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.7
+0.4
N.D.
-1.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.3
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.7
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.4
+0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.6
-0.2
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
+0.4
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.4
N.D.
+0.5
growth on ypd
YPD
+0.1
+0.1
+0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.3
+0.2
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.3
N.D.
+0.8
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
-0.2
N.D.
+0.7
auxotrophy
Dropout Complete
+0.1
+0.2
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.2
+0.1
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.3
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.8
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
+0.1
N.D.
+0.5
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