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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14613 and 14614 are separated by 1393 nucleotides
14614 and 14615 are separated by 436 nucleotides
14615 and 14616 are separated by 204 nucleotides
14616 and 14617 are separated by 381 nucleotides
mRNA_6245: 14613 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 343,220 to 344,409
14613
mRNA_6246: 14614 - Hypothetical Protein, at 345,803 to 347,833
14614
mRNA_6247: 14615 - K01551 arsA, ASNA1 arsenite-transporting ATPase, at 348,270 to 350,050
14615
mRNA_6248: 14616 - Interpro GET complex subunit GET2 0, at 350,255 to 351,472
14616
mRNA_6249: 14617 - K01052 LIPA lysosomal acid lipase/cholesteryl ester hydrolase, at 351,854 to 354,817
14617
Group
Condition
mRNA
_6245
mRNA
_6246
mRNA
_6247
mRNA
_6248
mRNA
_6249
14613
14614
14615
14616
14617
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-1.8
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
-1.1
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.4
-0.2
-1.5
N.D.
-0.3
auxotrophy
YNB Glucose
+0.3
-0.0
-1.5
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
-0.6
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-1.2
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.4
-0.6
N.D.
+0.2
auxotrophy
Dropout Complete
+0.2
+0.1
-1.2
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
-1.3
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.1
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
-0.7
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.0
-0.9
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
-0.5
N.D.
-0.2
growth on ypd
YPD
-0.2
-0.0
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.1
-0.9
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.2
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
+0.0
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.6
-0.0
-0.1
N.D.
-0.1
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