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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14619 and 14620 are separated by 55 nucleotides
14620 and 14621 are separated by 1016 nucleotides
14621 and 14622 are separated by 401 nucleotides
14622 and 14623 are separated by 174 nucleotides
mRNA_6251: 14619 - KOG4188 Uncharacterized conserved protein, at 357,602 to 358,776
14619
mRNA_6252: 14620 - K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit, at 358,832 to 359,230
14620
mRNA_6253: 14621 - HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 360,247 to 361,370
14621
mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361,772 to 365,441
14622
mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365,616 to 367,386
14623
Group
Condition
mRNA
_6251
mRNA
_6252
mRNA
_6253
mRNA
_6254
mRNA
_6255
14619
14620
14621
14622
14623
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.1
-3.2
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.2
-2.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.4
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.4
-1.7
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.5
+0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.0
-0.8
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-1.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-0.2
-0.4
-0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.5
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
N.D.
+0.1
-0.8
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.2
-0.3
-0.2
growth on ypd
YPD
-0.1
N.D.
+0.2
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
+0.4
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.1
-0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.2
+0.1
+0.0
auxotrophy
YNB Glucose
+0.5
N.D.
+0.0
-0.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.8
N.D.
+0.4
-0.2
-0.6
auxotrophy
Dropout Complete
+0.6
N.D.
-0.2
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
-0.0
+0.8
+0.1
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