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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14622 and 14623 are separated by 174 nucleotides
14623 and 14624 are separated by 547 nucleotides
14624 and 14625 are separated by 257 nucleotides
14625 and 14626 are separated by 842 nucleotides
mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361,772 to 365,441
14622
mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365,616 to 367,386
14623
mRNA_6256: 14624 - Hypothetical Protein, at 367,934 to 368,444
14624
mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368,702 to 371,060
14625
mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371,903 to 374,480
14626
Group
Condition
mRNA
_6254
mRNA
_6255
mRNA
_6256
mRNA
_6257
mRNA
_6258
14622
14623
14624
14625
14626
facs on lipid accumulation
Sorted High BODIPY Gate
-3.2
-1.1
+0.3
-0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.7
+0.7
+0.5
-1.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.4
-1.2
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.5
-0.8
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-2.3
-0.2
+0.4
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.8
-0.3
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
-0.3
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.0
+0.1
-0.4
growth on ypd
YPD
+0.1
-0.5
-0.3
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.1
-0.3
-0.2
auxotrophy
YNB Glucose
-0.5
+0.2
+0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
-0.3
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
+0.3
-0.1
+0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.1
+0.5
-0.0
auxotrophy
Dropout Complete
+0.0
+0.0
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.2
+0.0
+0.6
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.5
+0.3
+0.8
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.4
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.2
+0.3
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.1
+0.2
+0.6
+0.2
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