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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14625 and 14626 are separated by 842 nucleotides
14626 and 14627 are separated by 517 nucleotides
14627 and 14628 are separated by 463 nucleotides
14628 and 14629 are separated by 1234 nucleotides
mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368,702 to 371,060
14625
mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371,903 to 374,480
14626
mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374,998 to 377,098
14627
mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377,562 to 381,779
14628
mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383,014 to 384,624
14629
Group
Condition
mRNA
_6257
mRNA
_6258
mRNA
_6259
mRNA
_6260
mRNA
_6261
14625
14626
14627
14628
14629
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.6
-1.9
+0.1
-0.1
auxotrophy
YNB Glucose
-0.1
-0.2
-0.3
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.4
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.3
+0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.7
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.9
+0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.1
+0.2
-0.2
growth on ypd
YPD
+0.0
-0.0
-0.0
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
+0.2
-0.2
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.5
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
-0.4
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
+0.2
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.2
-0.0
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
-0.4
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
-0.1
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
+0.4
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.3
-0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.1
+0.3
+0.4
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