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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14627 and 14628 are separated by 463 nucleotides
14628 and 14629 are separated by 1234 nucleotides
14629 and 14630 are separated by 464 nucleotides
14630 and 14631 are separated by 1439 nucleotides
mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374,998 to 377,098
14627
mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377,562 to 381,779
14628
mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383,014 to 384,624
14629
mRNA_6262: 14630 - SMART-Gelsolin homology domain-SM00262,SUPERFAMILY--SSF55753, at 385,089 to 388,417
14630
mRNA_6263: 14631 - Hypothetical Protein, at 389,857 to 392,694
14631
Group
Condition
mRNA
_6259
mRNA
_6260
mRNA
_6261
mRNA
_6262
mRNA
_6263
14627
14628
14629
14630
14631
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
+0.1
-0.1
-0.4
+0.4
growth on ypd
YPD
-0.0
-0.1
-0.2
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.0
+0.0
-0.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.0
+0.1
-0.3
+0.1
auxotrophy
YNB Glucose
-0.3
+0.1
-0.3
+0.1
+0.4
growth on oleic acid
YNB Glucose
-0.4
+0.3
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
-0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.3
+0.2
-0.0
-0.1
auxotrophy
Dropout Complete
-0.2
-0.0
-0.0
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
+0.5
-0.1
+0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
+0.0
+0.1
+0.7
growth on ricinoleic acid
YNB Glucose
-0.4
+0.2
+0.2
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
+0.3
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
-0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
+0.4
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.7
+0.2
+0.4
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