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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14629 and 14630 are separated by 464 nucleotides
14630 and 14631 are separated by 1439 nucleotides
14631 and 14632 are separated by 89 nucleotides
14632 and 14633 are separated by 371 nucleotides
mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383,014 to 384,624
14629
mRNA_6262: 14630 - SMART-Gelsolin homology domain-SM00262,SUPERFAMILY--SSF55753, at 385,089 to 388,417
14630
mRNA_6263: 14631 - Hypothetical Protein, at 389,857 to 392,694
14631
mRNA_6264: 14632 - KOG1550 Extracellular protein SEL-1 and related proteins, at 392,784 to 393,598
14632
mRNA_6265: 14633 - K07897 RAB7A Ras-related protein Rab-7A, at 393,970 to 395,012
14633
Group
Condition
mRNA
_6261
mRNA
_6262
mRNA
_6263
mRNA
_6264
mRNA
_6265
14629
14630
14631
14632
14633
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.2
-1.1
N.D.
growth on ypd
YPD
-0.2
-0.2
-0.3
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
-0.1
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
+0.4
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
+0.4
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.1
+0.2
N.D.
auxotrophy
YNB Glucose
-0.3
+0.1
+0.4
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.4
+0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
+0.7
-0.6
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.5
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.2
-0.1
-0.1
N.D.
auxotrophy
Dropout Complete
-0.0
+0.1
+0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.5
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.2
+0.4
-0.3
N.D.
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