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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14633 and 14634 are separated by 1543 nucleotides
14634 and 14635 are separated by 219 nucleotides
14635 and 14636 are separated by 167 nucleotides
14636 and 14637 are separated by 213 nucleotides
mRNA_6265: 14633 - K07897 RAB7A Ras-related protein Rab-7A, at 393,970 to 395,012
14633
mRNA_6266: 14634 - Hypothetical Protein, at 396,556 to 399,256
14634
mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399,476 to 403,885
14635
mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404,053 to 405,342
14636
mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405,556 to 407,019
14637
Group
Condition
mRNA
_6265
mRNA
_6266
mRNA
_6267
mRNA
_6268
mRNA
_6269
14633
14634
14635
14636
14637
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
-0.9
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.5
+0.0
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.0
+0.5
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.3
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
+0.0
+0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.4
+0.9
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.6
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+1.0
-0.8
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.7
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.6
+0.6
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
+1.8
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+1.0
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.7
+1.1
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.5
+1.6
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
+2.4
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+2.1
+0.1
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
+2.6
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.6
+0.7
+0.6
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