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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14636 and 14637 are separated by 213 nucleotides
14637 and 14638 are separated by 725 nucleotides
14638 and 14639 are separated by 0 nucleotides
14639 and 14640 are separated by 1769 nucleotides
mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404,053 to 405,342
14636
mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405,556 to 407,019
14637
mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407,745 to 410,533
14638
mRNA_6271: 14639 - Hypothetical Protein, at 410,534 to 411,923
14639
mRNA_6272: 14640 - KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast), at 413,693 to 414,563
14640
Group
Condition
mRNA
_6268
mRNA
_6269
mRNA
_6270
mRNA
_6271
mRNA
_6272
14636
14637
14638
14639
14640
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.4
+0.0
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.5
-0.1
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.3
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
-0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.6
+0.0
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+1.8
-0.5
-0.3
-0.1
-0.3
auxotrophy
Dropout Complete
+1.6
-0.1
-0.3
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.4
-0.1
-0.1
+0.7
growth on ricinoleic acid
YNB Glucose
+0.5
+0.1
-0.1
-0.0
+0.5
growth on ypd
YPD
+0.2
+0.2
+0.1
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.6
+0.3
-0.0
+0.3
auxotrophy
YNB Glucose
+2.4
-0.3
-0.6
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.2
+0.0
-0.0
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.5
+0.1
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+2.6
-0.1
-0.6
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.8
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
+0.2
-0.1
+0.1
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+1.0
+0.3
-0.2
+1.9
ypd buoyancy
40 hrs High Buoyancy
+0.9
+0.6
+0.4
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+1.0
+0.7
-0.1
-0.2
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.6
+0.1
+0.1
+0.9
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