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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14638 and 14639 are separated by 0 nucleotides
14639 and 14640 are separated by 1769 nucleotides
14640 and 14641 are separated by 572 nucleotides
14641 and 14642 are separated by 1581 nucleotides
mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407,745 to 410,533
14638
mRNA_6271: 14639 - Hypothetical Protein, at 410,534 to 411,923
14639
mRNA_6272: 14640 - KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast), at 413,693 to 414,563
14640
mRNA_6273: 14641 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 415,136 to 416,506
14641
mRNA_6274: 14642 - Hypothetical Protein, at 418,088 to 419,666
14642
Group
Condition
mRNA
_6270
mRNA
_6271
mRNA
_6272
mRNA
_6273
mRNA
_6274
14638
14639
14640
14641
14642
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose
-0.6
-0.2
-0.0
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.0
N.D.
+0.0
auxotrophy
Dropout Complete
-0.3
+0.0
-0.4
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
-0.3
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.6
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.8
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.4
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.2
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.2
N.D.
-0.2
growth on ypd
YPD
+0.1
+0.2
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
+0.7
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
+0.5
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.7
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.6
N.D.
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.1
+0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.9
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
+1.9
N.D.
+0.3
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