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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14641 and 14642 are separated by 1581 nucleotides
14642 and 14643 are separated by 360 nucleotides
14643 and 14644 are separated by 793 nucleotides
14644 and 14645 are separated by 128 nucleotides
mRNA_6273: 14641 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 415,136 to 416,506
14641
mRNA_6274: 14642 - Hypothetical Protein, at 418,088 to 419,666
14642
mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420,027 to 422,108
14643
mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422,902 to 424,921
14644
mRNA_6277: 14645 - KOG2812 Uncharacterized conserved protein, at 425,050 to 426,717
14645
Group
Condition
mRNA
_6273
mRNA
_6274
mRNA
_6275
mRNA
_6276
mRNA
_6277
14641
14642
14643
14644
14645
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.8
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.6
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.4
-0.3
N.D.
auxotrophy
Dropout Complete
N.D.
+0.4
-0.8
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
-0.2
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.4
-0.2
N.D.
growth on ypd
YPD
N.D.
-0.1
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
-0.3
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.4
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.5
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.0
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.1
-0.0
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.3
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.1
+0.2
N.D.
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