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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14648 and 14649 are separated by 301 nucleotides
14649 and 14650 are separated by 289 nucleotides
14650 and 14651 are separated by 330 nucleotides
14651 and 14652 are separated by 141 nucleotides
mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431,030 to 432,502
14648
mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432,804 to 433,205
14649
mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433,495 to 438,419
14650
mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438,750 to 440,581
14651
mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440,723 to 442,428
14652
Group
Condition
mRNA
_6280
mRNA
_6281
mRNA
_6282
mRNA
_6283
mRNA
_6284
14648
14649
14650
14651
14652
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
-0.1
-0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.7
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.2
+0.2
+0.0
auxotrophy
YNB Glucose
N.D.
+0.6
-0.0
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.5
+0.3
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.8
-0.1
-0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.3
-0.2
-0.2
auxotrophy
Dropout Complete
N.D.
+0.7
-0.3
+0.2
-0.5
growth on ypd
YPD
N.D.
-0.2
+0.2
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.2
-0.3
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.6
+0.2
+0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.2
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+1.3
-0.1
-0.0
-0.6
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.4
+0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
+0.3
+0.3
-0.1
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