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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14649 and 14650 are separated by 289 nucleotides
14650 and 14651 are separated by 330 nucleotides
14651 and 14652 are separated by 141 nucleotides
14652 and 14653 are separated by 185 nucleotides
mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432,804 to 433,205
14649
mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433,495 to 438,419
14650
mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438,750 to 440,581
14651
mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440,723 to 442,428
14652
mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442,614 to 443,927
14653
Group
Condition
mRNA
_6281
mRNA
_6282
mRNA
_6283
mRNA
_6284
mRNA
_6285
14649
14650
14651
14652
14653
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.1
-0.2
-0.5
-0.6
growth on ypd
YPD
-0.2
+0.2
+0.1
-0.0
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.2
+0.2
+0.0
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.3
-0.4
-0.5
-0.8
growth on oleic acid
YNB Glucose
-0.7
-0.1
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.0
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.0
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.2
-0.2
+0.2
auxotrophy
YNB Glucose
+0.6
-0.0
-0.1
-0.7
+0.5
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.3
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.2
+0.1
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.2
-0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
+0.0
+0.6
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
+0.7
-0.3
+0.2
-0.5
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-0.3
+0.8
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.1
-0.1
-0.7
+0.8
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.3
-0.1
-0.0
-0.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.6
+0.3
+0.3
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
-0.3
+0.3
+0.6
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