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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14651 and 14652 are separated by 141 nucleotides
14652 and 14653 are separated by 185 nucleotides
14653 and 14654 are separated by 286 nucleotides
14654 and 14655 are separated by 483 nucleotides
mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438,750 to 440,581
14651
mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440,723 to 442,428
14652
mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442,614 to 443,927
14653
mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444,214 to 444,568
14654
mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445,052 to 447,744
14655
Group
Condition
mRNA
_6283
mRNA
_6284
mRNA
_6285
mRNA
_6286
mRNA
_6287
14651
14652
14653
14654
14655
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
-0.8
N.D.
-0.0
growth on ypd
YPD
+0.1
-0.0
-1.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.5
-0.6
N.D.
-0.1
auxotrophy
YNB Glucose
-0.1
-0.7
+0.5
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.4
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.5
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.6
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.7
+0.8
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.2
-0.2
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.6
-0.4
N.D.
-0.4
auxotrophy
Dropout Complete
+0.2
-0.5
+0.5
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.0
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
+0.4
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
+0.6
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.8
+0.4
N.D.
-0.1
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