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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14653 and 14654 are separated by 286 nucleotides
14654 and 14655 are separated by 483 nucleotides
14655 and 14656 are separated by 290 nucleotides
14656 and 14657 are separated by 479 nucleotides
mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442,614 to 443,927
14653
mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444,214 to 444,568
14654
mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445,052 to 447,744
14655
mRNA_6288: 14656 - KOG0876 Manganese superoxide dismutase, at 448,035 to 449,039
14656
mRNA_6289: 14657 - Hypothetical Protein, at 449,519 to 450,929
14657
Group
Condition
mRNA
_6285
mRNA
_6286
mRNA
_6287
mRNA
_6288
mRNA
_6289
14653
14654
14655
14656
14657
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.4
-0.5
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
-0.0
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
-0.1
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
-0.1
-0.9
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
+0.1
-0.2
-0.1
auxotrophy
Dropout Complete
+0.5
N.D.
-0.3
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.2
-0.6
growth on ypd
YPD
-1.4
N.D.
-0.2
+1.1
-0.1
auxotrophy
YNB Glucose
+0.5
N.D.
-0.4
+0.1
-0.5
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
-0.6
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.3
+0.6
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.2
+0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
+0.1
-0.8
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
+0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.1
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.8
N.D.
-0.3
+0.5
-0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.3
+1.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.3
+1.4
+0.1
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