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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14655 and 14656 are separated by 290 nucleotides
14656 and 14657 are separated by 479 nucleotides
14657 and 14658 are separated by 339 nucleotides
14658 and 14659 are separated by 348 nucleotides
mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445,052 to 447,744
14655
mRNA_6288: 14656 - KOG0876 Manganese superoxide dismutase, at 448,035 to 449,039
14656
mRNA_6289: 14657 - Hypothetical Protein, at 449,519 to 450,929
14657
mRNA_6290: 14658 - KOG0394 Ras-related GTPase, at 451,269 to 452,760
14658
mRNA_6291: 14659 - K12182 HGS, HRS, VPS27 hepatocyte growth factor-regulated tyrosine kinase substrate, at 453,109 to 455,308
14659
Group
Condition
mRNA
_6287
mRNA
_6288
mRNA
_6289
mRNA
_6290
mRNA
_6291
14655
14656
14657
14658
14659
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.5
-0.6
+0.3
-2.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.9
-0.2
+0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.1
+0.4
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.6
+0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.3
-0.4
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.0
-0.3
-0.1
auxotrophy
YNB Glucose
-0.4
+0.1
-0.5
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-0.1
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
+0.1
-0.1
auxotrophy
Dropout Complete
-0.3
-0.6
-0.3
-0.0
+1.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.6
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.8
+0.5
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.6
+0.1
-0.5
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.5
-0.1
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.6
-0.1
-0.5
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.6
+0.2
-0.4
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
+0.1
+0.4
+0.1
growth on oleic acid
YNB Glucose
-0.3
+1.0
+0.2
-0.5
+0.3
growth on ypd
YPD
-0.2
+1.1
-0.1
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+1.4
+0.1
-0.5
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.7
+0.0
+0.5
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