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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14657 and 14658 are separated by 339 nucleotides
14658 and 14659 are separated by 348 nucleotides
14659 and 14660 are separated by 176 nucleotides
14660 and 14661 are separated by 406 nucleotides
mRNA_6289: 14657 - Hypothetical Protein, at 449,519 to 450,929
14657
mRNA_6290: 14658 - KOG0394 Ras-related GTPase, at 451,269 to 452,760
14658
mRNA_6291: 14659 - K12182 HGS, HRS, VPS27 hepatocyte growth factor-regulated tyrosine kinase substrate, at 453,109 to 455,308
14659
mRNA_6292: 14660 - K15082 RAD7 DNA repair protein RAD7, at 455,485 to 457,859
14660
mRNA_6293: 14661 - K18467 VPS29 vacuolar protein sorting-associated protein 29, at 458,266 to 459,644
14661
Group
Condition
mRNA
_6289
mRNA
_6290
mRNA
_6291
mRNA
_6292
mRNA
_6293
14657
14658
14659
14660
14661
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.3
-2.4
+0.0
-3.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-1.2
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
-0.4
-0.1
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.1
+0.2
-1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.4
-0.3
-0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
+0.4
-0.1
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
+0.2
-0.3
-0.3
growth on ypd
YPD
-0.1
+0.2
+0.2
+0.3
-1.7
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
-0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
-0.4
+0.1
-0.3
auxotrophy
YNB Glucose
-0.5
-0.1
+0.5
-0.0
+0.0
growth on oleic acid
YNB Glucose
+0.2
-0.5
+0.3
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
+0.1
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
+0.5
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.4
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
+0.5
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.4
+0.5
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.1
+0.2
+0.0
-0.1
auxotrophy
Dropout Complete
-0.3
-0.0
+1.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.7
+0.0
+0.5
+0.3
-0.1
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