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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14659 and 14660 are separated by 176 nucleotides
14660 and 14661 are separated by 406 nucleotides
14661 and 14662 are separated by 627 nucleotides
14662 and 14663 are separated by 629 nucleotides
mRNA_6291: 14659 - K12182 HGS, HRS, VPS27 hepatocyte growth factor-regulated tyrosine kinase substrate, at 453,109 to 455,308
14659
mRNA_6292: 14660 - K15082 RAD7 DNA repair protein RAD7, at 455,485 to 457,859
14660
mRNA_6293: 14661 - K18467 VPS29 vacuolar protein sorting-associated protein 29, at 458,266 to 459,644
14661
mRNA_6294: 14662 - K00928 lysC aspartate kinase, at 460,272 to 462,518
14662
mRNA_6295: 14663 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 463,148 to 466,558
14663
Group
Condition
mRNA
_6291
mRNA
_6292
mRNA
_6293
mRNA
_6294
mRNA
_6295
14659
14660
14661
14662
14663
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.4
+0.0
-3.8
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
-0.2
-0.9
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
-1.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
-1.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.1
-0.3
N.D.
-0.7
growth on ypd
YPD
+0.2
+0.3
-1.7
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.4
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.7
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
-1.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.3
-0.3
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.3
-0.3
N.D.
-0.4
auxotrophy
YNB Glucose
+0.5
-0.0
+0.0
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.2
+0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.5
+0.3
+0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.1
+0.2
N.D.
-0.2
auxotrophy
Dropout Complete
+1.1
-0.1
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.3
-0.1
N.D.
+0.4
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