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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14660 and 14661 are separated by 406 nucleotides
14661 and 14662 are separated by 627 nucleotides
14662 and 14663 are separated by 629 nucleotides
14663 and 14664 are separated by 306 nucleotides
mRNA_6292: 14660 - K15082 RAD7 DNA repair protein RAD7, at 455,485 to 457,859
14660
mRNA_6293: 14661 - K18467 VPS29 vacuolar protein sorting-associated protein 29, at 458,266 to 459,644
14661
mRNA_6294: 14662 - K00928 lysC aspartate kinase, at 460,272 to 462,518
14662
mRNA_6295: 14663 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 463,148 to 466,558
14663
mRNA_6296: 14664 - Hypothetical Protein, at 466,865 to 468,121
14664
Group
Condition
mRNA
_6292
mRNA
_6293
mRNA
_6294
mRNA
_6295
mRNA
_6296
14660
14661
14662
14663
14664
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-3.8
N.D.
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.3
N.D.
-0.3
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
N.D.
-0.8
-0.5
growth on ypd
YPD
+0.3
-1.7
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
N.D.
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.7
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.0
N.D.
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.9
N.D.
-0.6
+0.8
growth on oleic acid
YNB Glucose
+0.3
-0.3
N.D.
-0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.1
N.D.
-0.1
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.3
N.D.
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose
-0.0
+0.0
N.D.
-0.4
+0.4
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
N.D.
-0.3
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
+0.4
-0.0
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
-0.3
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
-0.2
+1.1
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