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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14671 and 14672 are separated by 314 nucleotides
14672 and 14673 are separated by 1372 nucleotides
14673 and 14674 are separated by 1162 nucleotides
14674 and 14675 are separated by 284 nucleotides
mRNA_6303: 14671 - HMMPfam-Uncharacterised protein family UPF0052-PF01933,SUPERFAMILY--SSF142338, at 480,428 to 482,328
14671
mRNA_6304: 14672 - Hypothetical Protein, at 482,643 to 484,084
14672
mRNA_6305: 14673 - HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028, at 485,457 to 486,370
14673
mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487,533 to 494,216
14674
mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811
14675
Group
Condition
mRNA
_6303
mRNA
_6304
mRNA
_6305
mRNA
_6306
mRNA
_6307
14671
14672
14673
14674
14675
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.6
-0.6
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-2.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
-0.9
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
-0.8
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
-0.4
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.5
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
+0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
+0.5
-0.2
-0.1
growth on ypd
YPD
-0.1
+0.4
-0.5
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.6
-0.2
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.5
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+1.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.3
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
-0.1
+0.0
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.5
+0.5
-0.2
-0.0
auxotrophy
Dropout Complete
+0.1
+0.3
+0.7
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.0
+0.5
+0.1
+0.1
auxotrophy
YNB Glucose
+0.1
+0.8
+0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+1.0
+0.5
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.5
+0.5
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.8
+0.8
+0.0
+0.1
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