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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14673 and 14674 are separated by 1162 nucleotides
14674 and 14675 are separated by 284 nucleotides
14675 and 14676 are separated by 939 nucleotides
14676 and 14677 are separated by 425 nucleotides
mRNA_6305: 14673 - HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028, at 485,457 to 486,370
14673
mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487,533 to 494,216
14674
mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811
14675
mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499,751 to 502,382
14676
mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552
14677
Group
Condition
mRNA
_6305
mRNA
_6306
mRNA
_6307
mRNA
_6308
mRNA
_6309
14673
14674
14675
14676
14677
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.6
-0.2
-1.6
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.1
+0.2
-1.0
-0.5
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
+0.1
-0.8
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.2
+0.1
+0.4
+1.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.0
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.1
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.2
-0.1
-0.4
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.1
-0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.1
-0.1
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
+0.3
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.0
+0.0
-0.3
growth on oleic acid
YNB Glucose
+0.5
-0.2
-0.0
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.2
+0.3
-0.4
growth on ypd
YPD
-0.5
+0.1
+0.4
+0.5
-0.5
auxotrophy
Dropout Complete
+0.7
-0.2
+0.3
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.2
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose
+0.3
-0.1
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+1.0
-0.2
-0.2
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.0
+0.1
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
+0.5
-0.0
+0.3
+0.2
-0.0
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