Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14673 and 14674 are separated by 1162 nucleotides14674 and 14675 are separated by 284 nucleotides14675 and 14676 are separated by 939 nucleotides14676 and 14677 are separated by 425 nucleotides mRNA_6305: 14673 - HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028, at 485,457 to 486,370 14673 mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487,533 to 494,216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499,751 to 502,382 14676 mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552 14677
Group Condition mRNA_6305 mRNA_6306 mRNA_6307 mRNA_6308 mRNA_6309
14673 14674 14675 14676 14677
facs on lipid accumulation Sorted High BODIPY Gate -0.6 -0.6 -0.2 -1.6 -0.4
facs on lipid accumulation Sorted No BODIPY Gate -0.8 +0.1 +0.2 -1.0 -0.5
growth on ricinoleic acid YNB Glucose -0.5 +0.0 +0.1 -0.8 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -2.2 +0.1 +0.4 +1.2 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 +0.0 -0.7 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.9 -0.1 -0.1 +0.1 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.5 -0.2 -0.1 -0.4 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 +0.1 +0.1 -0.1 -1.1
auxotrophy YNB Glucose 75mM Arginine +0.5 -0.1 -0.1 -0.4 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -0.0 +0.3 +0.3 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.2 +0.0 +0.0 -0.3
growth on oleic acid YNB Glucose +0.5 -0.2 -0.0 -0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.2 -0.0 +0.3 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.0 +0.2 +0.3 -0.4
growth on ypd YPD -0.5 +0.1 +0.4 +0.5 -0.5
auxotrophy Dropout Complete +0.7 -0.2 +0.3 -0.4 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 -0.2 -0.1 +0.2 -0.1
auxotrophy YNB Glucose +0.3 -0.1 +0.2 +0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy +1.0 -0.2 -0.2 -0.0 -0.0
auxotrophy YNB Glucose 75mM Methionine +0.8 +0.0 +0.1 +0.1 -0.4
growth on oleic acid YNB Oleic Acid +0.5 -0.0 +0.3 +0.2 -0.0
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