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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14674 and 14675 are separated by 284 nucleotides
14675 and 14676 are separated by 939 nucleotides
14676 and 14677 are separated by 425 nucleotides
14677 and 14678 are separated by 610 nucleotides
mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487,533 to 494,216
14674
mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811
14675
mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499,751 to 502,382
14676
mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552
14677
mRNA_6310: 14678 - Hypothetical Protein, at 504,163 to 504,987
14678
Group
Condition
mRNA
_6306
mRNA
_6307
mRNA
_6308
mRNA
_6309
mRNA
_6310
14674
14675
14676
14677
14678
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.2
-1.6
-0.4
-3.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
+0.2
-0.1
-3.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
-1.1
-2.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-1.0
-0.5
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
-0.7
+0.2
-1.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
-0.4
-0.4
-0.4
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.2
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
+0.0
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.0
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.8
-0.2
+0.1
auxotrophy
Dropout Complete
-0.2
+0.3
-0.4
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.3
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
+0.1
-0.4
+0.0
growth on ypd
YPD
+0.1
+0.4
+0.5
-0.5
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.4
-0.3
+0.9
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
+0.2
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
+1.2
-0.3
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.3
-0.5
+0.2
auxotrophy
YNB Glucose
-0.1
+0.2
+0.1
-0.1
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.3
-0.4
+1.0
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